Uncharted however exceeds in more than anything else i've ever played, except maybe legacy of kain which incidentally Amy Hennig penned.
U1 and U2 didn't have anywhere near the "best" story ever. In fact, they were filled with tons of cliches and predictable tropes, and Amy has gone on record to admit that.
But that's not why those games were good. It's the execution and voice acting that made them memorable.